PRLD November 12, 2025

Prelude Therapeutics Q4 2023 Earnings Call - Advancing Selective Oncology Programs with Incyte Partnership

Summary

Prelude Therapeutics outlined strategic advances in their R&D focus, highlighted by two lead candidates targeting myeloproliferative neoplasms (MPN) and ER-positive breast cancer slated for clinical entry in 2026. Their novel JAK2 V617F selective inhibitor aims to address a large MPN population with a disease-modifying potential, distinguishing itself by sparing normal bone marrow function—a key limitation of current treatments like ruxolitinib. Meanwhile, the KAT6A selective degrader presents a differentiated mechanism promising enhanced efficacy and reduced hematological toxicity compared to existing dual inhibitors. The company secured a $60 million upfront payment through an exclusive option deal with Incyte for the JAK2 program, encompassing potential total payments up to $910 million contingent on milestones. Prelude's emphasis on rigorous preclinical models and optimized compounds aims to accelerate development, with planned IND filings and Phase 1 trials commencing next year. While competition exists, particularly in the KAT6A space, Prelude is confident in its selective degrader strategy to secure a competitive edge and expedite pathways to registrational studies.

Key Takeaways

  • Prelude is sharpening its R&D focus on two lead drug candidates targeting MPN and ER-positive breast cancer, both expected to enter clinical trials in 2026.
  • The JAK2 V617F selective inhibitor targets a mutation present in a large segment of MPN patients, potentially providing a disease-modifying therapy with less hematological toxicity compared to current JAK2 inhibitors.
  • Current JAK2 inhibitors like ruxolitinib lack selectivity, affecting both mutant and normal JAK2 similarly, which limits dosing and therapeutic windows.
  • Prelude's JAK2 inhibitor uniquely binds the allosteric JH2 domain, exploiting a 'deep pocket' to selectively inhibit mutant JAK2, sparing normal hematopoiesis.
  • The KAT6A selective degrader is designed to avoid the bone marrow toxicity seen with dual KAT6A/B inhibitors, showing promising preclinical efficacy and safety profiles.
  • Preclinical studies demonstrated complete tumor regressions in resistant ER-positive breast cancer models with the KAT6A degrader, and importantly, mitigated neutropenia in bone marrow assays and animal models.
  • Prelude entered a time-limited exclusive option agreement with Incyte for the JAK2 program, receiving $60 million upfront and potential total payments up to $910 million including milestones and royalties.
  • If Incyte declines to exercise the option, Prelude retains full global rights to the JAK2 program.
  • Prelude expanded its collaboration with Exselera to apply its degrader technology to additional targets, with potential licensing to other partners for non-dilutive capital.
  • Prelude plans to rapidly advance clinical development including combination therapies and seeks to accelerate to registrational trials contingent on early clinical data.
  • Companion diagnostics for JAK2 V617F mutation are standard of care and will be integrated into clinical development without significant barriers.
  • Prelude leverages insights from its SMARCA2 degrader program to optimize potency, selectivity, and pharmacokinetics in their KAT6A degrader.
  • The company is confident in robust preclinical models for efficacy and safety that give a strong signal for clinical differentiation over existing drugs, including Pfizer’s KAT6A/B dual inhibitor.
  • Prelude expects initial Phase 1 data for the JAK2 inhibitor to be generated starting mid-2026, with KAT6A clinical data anticipated later, possibly in 2027.
  • Strategic business development, including the Incyte deal, solidifies Prelude’s capital position and enhances its ability to progress transformative oncology programs efficiently.

Full Transcript

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Morning, everyone, and welcome everyone to the Prelude Therapeutics Investor Conference Call. Today’s call is being recorded and is expected to last up to 45 minutes. At this time, I will now turn the call over to Prelude’s Chief Financial Officer and Chief Legal Officer, Bryant Lim. Please go ahead.

Bryant Lim, Chief Financial Officer and Chief Legal Officer, Prelude Therapeutics: Thank you, Operator. During today’s call, we will make forward-looking statements based on current expectations, including statements concerning anticipated discovery, preclinical, and future clinical development activities for our product candidates, the potential safety, efficacy, benefits, and addressable market for our product candidates, and clinical trial results for our product candidates, together with other statements regarding our plans, prospects, and expectations. Such statements represent our judgments as of today, are not promises or guarantees, and as you know, may involve risks and uncertainties that may cause actual results to differ from the results discussed in the forward-looking statements. Please refer to our filings with the SEC, which are available through the Investor Relations section of our website for information concerning risk factors that may affect the company. We undertake no obligation to update forward-looking statements except as required by law.

During this call, we will also be referring to certain slides from our corporate presentation that are available on the Investors section of our corporate website under Presentations and Events. Also on this call are Chris Vaddi, Prelude’s Founder and Chief Executive Officer, as well as Peggy Shirley, our Chief Scientific Officer, and Sean Brusky, our Chief Business Officer. I will now turn the call over to Chris to kick things off.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Thank you, Bryant, and good morning to everyone joining us today. Over the past quarter, we’ve made a series of strategic decisions designed to sharpen our R&D focus, optimize our capital allocation, and align our business strategy with programs that we believe offer the highest probability of success. These steps strengthen our ability to deliver on our mission to discover and develop transformative medicines that can meaningfully improve patient outcomes in cancer. Importantly, as part of these efforts, we’ve also enhanced our financial position, providing us with additional cash runway to advance our lead programs into clinical development. Looking ahead, our primary focus will be on rapidly advancing two development candidates that we believe represent compelling opportunities for our investors, with both programs expected to enter the clinic in 2026. The first is a JAK2 V617F selective inhibitor for myeloproliferative neoplasms, or MPN.

The second is a KAT6A selective degrader for ER-positive breast cancer. Both of these programs target clinically validated pathways and have the potential to demonstrate efficacy and safety differentiation in early clinical development. In addition, we believe that these molecules significantly expand the clinical options over currently available treatments for cancers we are targeting. Meanwhile, our discovery team made significant progress in advancing next-generation ADCs called degrader antibody conjugates, or DACs. Our early-stage DAC program targeting mutant CALR, which is a very promising target in MPN, shows potential to drive deeper clinical and molecular responses in our preclinical studies. We look forward to presenting additional data from this program at the American Society of Hematology’s ASH annual meeting in December. I’ll begin this morning with an overview of our JAK2 V617F selective inhibitor program, which will also be featured as an oral presentation at the upcoming ASH.

Given that the content of our oral presentation is embargoed until ASH, I will limit my remarks to our approach and the opportunity we see in targeting this mutation as a potential disease-modifying approach for a large subset of MPN patients. Peggy will then review the KAT6A selective degrader program with our lead candidate poised to enter the clinic in 2026. Our Chief Business Officer, Sean Brusky, will then provide an overview of the exclusive option agreement with Incyte for the JAK2 program that we announced last week and future plans for our DAC programs. I will return for closing comments before opening up the call for your questions. Let me draw your attention to the JAK-STAT pathway on slide seven of our corporate deck. One of the JAK enzymes called JAK2 plays a key role in normal hematopoiesis by mediating growth factor signaling.

These growth factors include erythropoietin for red blood cell production, thrombopoietin for platelet production, and GM-CSF for white blood cell production. In MPN, an activating mutation in JAK2 called JAK2 V617F results in an unchecked activation of JAK-STAT signaling and hyperproliferation of myeloid and erythroid cells and platelets, which can lead to multiple forms of MPN, including polycythemia vera, or PV, essential thrombocythemia, or ET, and then even a more serious condition known as myelofibrosis, or MF. Currently approved JAK2 inhibitors inhibit normal and mutant JAK2 similarly. This lack of selectivity results in inhibiting normal and abnormal bone marrow function equally and to a very narrow therapeutic window. Drug ruxolitinib, or Jakafi, is the first approved JAK2 inhibitor for MPN. As the first targeted therapy to be approved for MF and the only JAK2 inhibitor approved for PV, ruxolitinib has been absolutely transformative for many patients.

It should be noted that several members of our team played significant roles in its discovery and development in our previous roles at Incyte. It was tremendously gratifying to see drug Jakafi become the gold standard in the treatment of MPN, especially in the spleen and symptom benefits it delivers to MPN patients with a debilitating disease. However, despite the clinical benefits it offers, drug Jakafi treatment is associated with high rates of anemia and thrombocytopenia that require dose modifications and often limit the use in patients that are anemic and/or thrombocytopenic at baseline, along with the limitation of dosing for maximal efficacy. Because drugs do not specifically target V617F mutated progenitor cells, molecular responses occur at very low rates and take years to achieve.

Ever since the discovery of JAK2 V617F mutation in 2004, what we’ve really wanted is an inhibitor that is selective for the mutant cells and one that does not interfere with normal bone marrow function. Such a molecule could provide the same transformative treatment for MPNs that BCR-ABL inhibitors like Gleevec delivered for CML. We are excited about the possibility of finally achieving that goal by the breakthroughs in designing molecules that can directly target JAK2 V617F. As shown on slide nine, the challenge had been that the mutation occurs in the part of the enzyme called the JH2 domain that is distinct from the catalytic kinase domain called the JH1 domain, where the current JAK2 inhibitors bind. Our scientists were able to design potent inhibitors of JAK2 that bind an allosteric JH2 binding site where the V617F mutation resides.

We further achieved selectivity over normal JAK2 by directly targeting what we refer to as a deep pocket, which contains three phenylalanine residues that include the third phenylalanine coming from the V617F mutation. By utilizing extra structure-based approaches, our chemists identified a novel series of compounds that can access the deep pocket to selectively target mutant JAK2 over wild-type or normal JAK2 that is present in normal cells. Digging a bit more into the specifics of our lead development candidate, the PICA-MOLR JAK2 JH2 binder with significant selectivity for mutant JAK2 over normal JAK2. In addition to the biochemical and cellular potency and selectivity, our lead candidate has demonstrated the required physicochemical and pharmacokinetic properties that enable achieving high levels of mutant JAK2 inhibition. In preclinical efficacy and toxicology studies, this molecule achieved better efficacy compared to drug selutinib without impacting wild-type JAK2 and normal bone marrow function.

We look forward to providing additional preclinical data once it’s presented at ASH in December, but I can inform you that we’re well along with our IND enabling activities, and we’re planning to file an IND in the first quarter of 2026 and expect to initiate the phase one in the first half of 2026. In terms of prevalence, market size, and opportunity, the target patient population includes greater than 95% of PV patients, 50%-60% of patients with MF and ET that are V617F positive. Collectively, more than 200,000 MPN patients in the US alone could ultimately benefit from a JAK2 V617F selective inhibitor with disease-modifying potential.

We did announce last week, and Sean will provide more detail, that we entered into an exclusive option agreement with Incyte that provides them an opportunity to acquire the program during a defined time period as we aggressively drive forward the clinical development of our lead candidate and preclinical development of potential backup candidates during that option period. We look forward to sharing more details at ASH. I’ll now turn the call over to Peggy to provide an overview of our selective KAT6A degrader program. Peggy?

Peggy Shirley, Chief Scientific Officer, Prelude Therapeutics: Thanks, Chris, and good morning, everyone. Today, I wanted to summarize our efforts that led to the successful discovery of our first-in-class oral KAT6A selective degrader and highlight how this is a differentiated approach to maximize the benefits of a clinically validated target in ER-positive breast cancer. Although multiple agents, including CDK4/6 inhibitors and oral SERDs, have been developed for patients with ER-positive breast cancer, resistance to these agents continues to occur. Thus, there remains an important need for additional treatment options that can complement the current therapies in the management of breast cancer. Recent data that Pfizer presented on their KAT6A/B dual inhibitor suggests that targeting the KAT6 protein may provide a new avenue to address this important unmet need.

As summarized in slide 14 in the corporate deck, the data Pfizer presented at ASCO earlier this year demonstrated that their CDK6AB dual inhibitor in combination with fulvestrant had impressive activity in a heavily pretreated population of ER-positive metastatic breast cancer patients, showing high response rates of greater than 30% and significant improvement in progression-free survival. Based on this, the program is now advancing into pivotal studies. Despite the promising efficacy, the safety and tolerability profile has left room for improvement, as investigators noted rates of grade 3/4 neutropenia and also dysgeusia in most patients. This has resulted in the majority of patients requiring dose reductions or modifications to address the neutropenia issues. These findings likely suggest that there will be challenges combining with standard of care CDK4/6 inhibitors and, as such, may initially be limited to second or third-line therapy.

We believe that these safety and tolerability issues are the result of dual inhibition of KAT6A and KAT6B and that selective degradation of KAT6A provides a real opportunity for differentiation in the clinic. Slide 15 of our corporate deck thematically shows the rationale for selective degradation of KAT6A. KAT6A amplification and overexpression in cancer leads to its increased activity. Because KAT6A regulates the expression of the estrogen receptor, MYC, and other cell cycle genes, its increased activity drives ER-positive breast cancer growth. Although KAT6A overexpression drives cancer growth, both KAT6A and its related family member, KAT6B, are important in driving normal hematopoiesis. Preclinical data demonstrate that loss of both KAT6A and KAT6B results in bone marrow toxicity. Based on this, our approach of selectively degrading KAT6A has the potential to deliver differentiated safety and efficacy over non-selective KAT6AB inhibitors.

As shown in slide 16, our lead compound is a highly potent degrader of KAT6A, with selectivity for KAT6A over KAT6B of greater than 1,000-fold, as shown in the middle panel of the slide. We’ve seen excellent oral PK across all species and compelling in vivo efficacy as monotherapy, as shown in the graph on the right, with complete regressions observed at well-tolerated low once-daily oral doses in a model of KAT6A-amplified ER-positive breast cancer. As shown on slide 17, we also explored the in vivo activity of our KAT6A selective degraders in additional models that are more resistant to CDK4/6 inhibitors. In the more resistant T47D model, we still have significant efficacy with complete regressions observed at well-tolerated doses.

Importantly, as shown on the right panel, when we benchmarked against a dual inhibitor, we seem to demonstrate much better efficacy as a monotherapy, even when compared to a CDK4/6 dual inhibitor in combination with fulvestrant. Our preclinical data clearly demonstrates that selective KAT6A degradation shows robust efficacy in ER-positive breast cancer models. We next asked if selective KAT6A degradation could mitigate the neutropenia observed with dual CDK4/6 inhibitors. As shown in slide 18 on the left, ex vivo experiments with human bone marrow cells demonstrated a reduction in these cells that give rise to neutrophils, whereas we see a very limited effect in this assay with our selective KAT6A degrader. On the right, we ran an in vivo experiment to confirm these results.

After 10 days of treatment, we see there is transient neutropenia in the mice treated with a dual KAT6A/B inhibitor, but we have not observed significant neutropenia with our selective compounds. In summary, Prelude has discovered and developed multiple first-in-class, highly selective KAT6A degraders, which in preclinical models show the potential to achieve best-in-class efficacy and to differentiate on safety and combinability early in clinical development. Our lead development candidate has completed dosing in non-GLP studies in rats and dogs and has a favorable tolerability profile. Importantly, no dose-dependent hematologic toxicities were observed. With that as background, we’re excited to note that we’re on track for an IND filing in mid-2026, with a phase one start expected in the second half of 2026. With that, I’ll now turn the call over to Sean to provide an update on our recent business development activities.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Thank you, Peggy. Good morning, everyone. Today, I wanted to provide an overview of the exclusive option agreement we entered into last week with Incyte and also discuss our plans as it relates to degrader antibody conjugates. The agreement with Incyte is a time-bound exclusive option agreement for the potential future purchase of our JAK2 V617F program assets. The option period commenced upon executing the deal and is structured so that Incyte has up to 15 months, with potential for a three-month extension as needed to exercise its option, no more than 18 months in total. Importantly, Incyte has the ability to exercise its option at any point during the option period. If at the end of the option period, Incyte elects to not exercise its option, Prelude retains full ownership and global rights to the JAK2 program.

At the outset of the option agreement, Incyte paid an upfront fee of $35 million and also purchased $25 million of Prelude non-voting common stock at a price of $4 per share, $60 million in total. If Incyte elects to exercise its option, an additional upfront payment of $100 million will be paid to Prelude upon closing of the asset purchase agreement, plus additional downstream milestones and royalties. In fact, the deal includes up to $775 million in additional payments if certain clinical development and regulatory milestones are met, plus single-digit royalties on global sales as our JAK2 development candidates advance. In total, the deal can deliver up to $910 million in cash payments and future milestones to Prelude. Next, I’d like to mention our business development work on degrader antibody conjugates. We’ve recently amended and expanded the scope of our existing collaboration with Exselera.

This agreement enables Exselera to use Prelude’s proprietary degrader payloads on additional undisclosed antibody targets of interest and, importantly, also enables Prelude to license our payloads to other potential partners. The DAC field is really taking off, and degrader payload licensing arrangements have the potential to further expand the impact of this new technology while bringing in non-dilutive capital to support our ongoing R&D efforts as the field advances. With that, I want to hand it back over to Chris.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Thanks, Sean. Before opening up the line for questions, I’d like to offer a few additional remarks related to our progress to date and where we expect to go moving forward. As I mentioned at the outset, today marks a transformative day for Prelude. We are a company that is rooted in science and discovery excellence, with a mission to develop precision oncology medicines to transform the treatment landscape for patients with cancer. We are energized to be entering 2026 with two lead programs with highly differentiated development candidates, well-understood and clinically validated mechanisms, and clear development paths, a strong and experienced team, and the financial means to provide a runway for execution into 2027. We look forward to keeping you apprised of our progress and additional updates in the coming months. With that, I’ll take some time to answer your questions.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Thank you. As a reminder to ask a question, please press star 11 on your telephone and wait for your name to be announced. To withdraw your question, please press star 11 again. Please stand by while we compile the Q&A roster. Our first question comes from the line of Rennie Benjamin from Citizens.

Hey, good morning, guys. Thanks for taking the questions and congratulations on this deal with Incyte and for kind of reorganizing the company to go after what I think are extremely well-validated targets. I have a couple of questions for you. I guess starting off, can you talk a little bit about how you’re thinking about the clinical development of both the mutant CALR and the KAT6A programs, especially given that you have competitors that are, call it, a couple of years ahead of you in development? How are you thinking about the clinical development of these assets? Do you want to be a fast follower into the same indications? Do you want to explore different indications? How should we be thinking about the path forward? I have a couple of follow-ups.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Thanks, Ryan. This is Chris Vaddi. As we discussed in the call, our molecule is very important and selective in JAK2 V617F. As a result, V617F-positive MPNs that include myelofibrosis, polycythemia vera, and essential thrombocythemia are the three indications that we could look at. As for in-person human study, myelofibrosis, which is the most serious of the conditions, would be certainly one of the most appropriate initial first-in-man studies that we could start with. High-risk polycythemia vera or high-risk essential thrombocythemia are additional indications that could be added either from the beginning as part of the dose escalation or once we demonstrate that we have a biologically or pharmacologically active dose. Those are the things that we’re currently in the process of finalizing. Hopefully, we will be underway shortly. We will be able to talk about it in more detail.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Did you actually answer? Oh, sorry. Go ahead.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: No, no. I was also going to comment on the KAT6A program. And then, of course, happy to take any further follow-up questions. On the KAT6A program, again, our intent in developing a highly selective KAT6A is to fundamentally ask the question in ER-positive breast cancer where we see a clear proof of concept and clinical validation from Pfizer’s molecule. The hypothesis we have is based on genetic data, preclinical data, that if you can selectively use KAT6A, that you can reduce and avoid the hematological toxicity. We are going to be focused in the phase one development to initially, obviously, as a monotherapy, but rapidly advance it to fulvestrant combinations and really asking the question, do we see the differentiated profile that we are seeing in the preclinical studies in the clinic? If so, rapidly move into the combinations with the backbone therapies in ER-positive breast cancer.

We are really going to be focused on ER-positive breast cancer for our KAT6A program.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Got it. Okay. I guess just as a follow-up, just to help us understand the Prelude platform and the kind of preclinical work that you do, is the chemistry so differentiated that the preclinical models predict a—for any of these molecules, by the way, does it predict a better efficacy, safety, or both? As part of your preclinical testing, and I did not get a chance to see the slides, what tests do you run to give you the confidence that you have a best-in-class drug on your hands versus, let’s say, a competitor like Pfizer that is already in the clinic?

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Let me just at a very high level start and just say that there are really good preclinical models for—I think that your question pertains to both programs, for myeloproliferative neoplasms and also ER-positive breast cancers that we can profile head-to-head against already approved agents or the ones that are moving in the clinical development. For details, I will just turn the question over to Peggy to answer.

Peggy Shirley, Chief Scientific Officer, Prelude Therapeutics: Sure. In terms of the preclinical models, both in vitro and in vivo, we really established a robust number of those models to characterize the compounds. I think it’s more than just the in vivo and in vitro assays. We also spend a lot of time building in the PK properties and really optimize those so that we know we have a molecule that will be optimal in the clinic in terms of covering the target and giving us the selectivity and the potency that we’ll need to really target the pathway. With KAT6A specifically, I think we have a number of differentiating features. We have KAT6A selectivity over the other family members. We also took a degrader approach as opposed to an inhibitor approach. We thought that that would be a differentiating feature. We can eliminate the protein through degradation.

It also helps us build in that selectivity that we think is really critical, the selectivity and the potency. In that setting, I think we have a very differentiated approach for KAT6A over the Pfizer molecule.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Terrific. Thank you very much. I’ll jump back in the queue.

Thank you. One moment for our next question. Our next question comes from the line of Roger Song from Jefferies.

Roger Song, Analyst, Jefferies: Okay. Great. Thanks for taking my question. Thanks for sharing additional information around those two new clinical programs, interclinical programs. On JAK2, can you just remind us how the current mutation testing for this mutation is currently performing in the clinical, and then how likely you need to do the companion diagnosis as you continue the clinical development? I have a question around the KAT6A as well.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Yeah, absolutely. V617F itself, now that we have multiple therapies in MPNs that are approved, even prior to that, has really become a sort of a standard of care diagnostic test for MPNs. In the case of PV, where greater than 95% of the patients are positive for V617F, there is not a huge need for the test. However, in myelofibrosis that do not progress from PV to MF, there are primary myelofibrosis patients for whom it is somewhat critical. Currently, approved therapies really are not specific to V617F positive, so they do not really require the testing. In our case, we were going to be relying on routinely used qPCR-type testing that is performed as standard of care for these MPNs.

Roger Song, Analyst, Jefferies: Got it. Okay. Regarding the KAT6A, given this is also a degrader approach, how do you differentiate this degrader approach versus your previous SMARCA2? What are the learnings you have applied from the previous degrader to KAT6A? Maybe just lastly, in your moving those two programs into the clinical in 2026, with current cash runway, how much clinical data release should we expect in 2026? What will be the value inflection point for those data readouts? Thank you.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Yeah. I’ll let Peggy answer the first part of your question, and I’ll come back to the second part.

Peggy Shirley, Chief Scientific Officer, Prelude Therapeutics: Sure. I think we learned a lot from our SMARCA2 program in terms of building in potency and selectivity and also building in, as I mentioned, all those really important PK properties like oral bioavailability into the KAT6A program. We really learned a lot, I think, from the SMARCA2 program in terms of building in all those features that you need to optimize the compound to take it forward in the clinic, especially selectivity for the KAT6A over KAT6B protein. We utilized a lot of the knowledge and experience that we gained through the SMARCA2 program to generate what we believe are really optimized degrader compounds to take into the clinic.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Yeah. With regard to your question on how far the cash takes us, as we said, we are currently on track to file IND for the JAK program in the early part of 2026 and initiate the trials in perhaps the second quarter. For that program, we will be in dose escalation. Until we get into the clinic, we have certain projections in terms of how many dose cohorts that it might take to get to the levels that we would expect the pharmacological activity. I can’t provide exact guidance until we actually start to enroll patients. We think we’ll be well underway in the phase one program, and we’ll be keeping the street, obviously, updated with any progress we make.

With regard to the KAT6A program, again, the major milestone is really successfully completing the IND enabling studies and opening up the IND and starting enrolling patients. In terms of actual clinical updates, we probably have to wait into 2027 to be providing them. In terms of progress into the clinic, obviously, we will update as we advance to 2026.

Roger Song, Analyst, Jefferies: Got it. Yeah. Thank you for taking the question.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Thank you. One moment for our next question. Our next question comes on the line of Robert Burns from HC Wainwright.

Hey, guys. Thanks for taking my questions. And congrats on the deal with Incyte. Just a few from me, if I may. So obviously, the KAT6A competitive landscape, when we look at that, there’s obviously numerous players in the space, not just Pfizer. Obviously, you got B1 as well. And I see the differentiation with the selective KAT6A degradation. So I was curious, for those more selective inhibitors or degraders that are in the landscape, how are you looking at them from a competitive landscape threat perspective? And then my second one would be, obviously, we’re also seeing a lot of companies go straight from phase one when they see encouraging efficacy straight into phase three. Is that something that you would also consider? And are there ways that you could expedite the development time of that compound? Thank you.

Peggy Shirley, Chief Scientific Officer, Prelude Therapeutics: Yeah. I can start with that. I think in terms of the selectivity, the selective inhibitors that have been profiled, at least the ones that we’ve seen to date, they do show that selectivity mitigates some of the bone marrow toxicity that we also see. I’d say with the degrader approach, it really allowed us to have more robust efficacy compared to even the selective inhibitors. We think that there’s a different biology associated with degrading the protein because it is part of a complex than just inhibiting it. We think that’s really beneficial from the efficacy point of view. I think there will be differentiation from the selective inhibitors. I think they also provide additional abilities to mitigate some of the bone marrow toxicity.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Yeah. I can just follow up on that. Again, fundamentally, the whole concept of degraders, right, that are currently being developed across multiple targets is the idea that you just get much more deeper target engagement. And given the potency of our KAT6A molecule and the PK properties that the team has built into it, it should allow us to very rapidly get to the levels of target inhibition that would differentiate our molecule versus others. I think that is a really important aspect of it because the sooner you get there in the clinic, the faster we can move. And then there’s a second part of this question.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Would we advance rapidly and quickly?

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Correct. Yeah. Good question. I think there is a lot of learning from the data that is out there in terms of PD as well as combinations. We would be looking to actually do more combinations early in the development because ultimately, we want to get to early alignment therapy, which currently are not being at least pursued by the existing clinical-stage inhibitors. We would be looking to generate that data. To answer your question, yes, we would be looking for ways to advance rapidly to registrational-stage programs once we confirm some of the preclinical hypotheses we have in the clinic.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Thank you. One moment for our next question. Our next question comes from the line of Rennie Benjamin from Citizens.

Hey, guys. Thanks for taking the follow-up. Can you just talk a little bit about the genesis of kind of why and how the deal with Incyte took place, given that they have their own inhibitor already in the clinic? Is it something that was ongoing for a while? Is this something once the new CEO took over, the discussion started? Anything that would give us a clue as to how this nice deal came about? Thanks.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: Yeah. Thanks. As we were thinking throughout 2025 and even late 2024 in terms of capitalizing the company and funding the programs that we had ongoing, right? Both JAK2 and KAT6A programs made significant advances. We were really anticipating that they would be moving into the IND enabling phase in this calendar year, as well as the SMARCA2 program that was moving forward in the clinic. Obviously, companies of our size would always be looking at business development as one of the options to basically fund these really important programs. We have been in discussions with a number of companies for both KAT6A and for all the programs. Obviously, Incyte is a leader in the MPN space. There were several other companies that were very interested in the program as well.

At the end of the day, when we look at all the options that the company had, the option agreement with Incyte actually was, we believed, was the best option to not only bring the capital that we need into the company, but also put the program in the hands of a company for whom it is fundamentally, of course, a strategic area. Not only would they move aggressively through the clinical development, but also would commercialize the product if we’re fortunate to get to that point. We’re excited to be working with Incyte in moving this program.

With regard to your other question about their own program, we really do not have any visibility into the program, but we hope that our novel chemical space that our scientists discovered to create our molecules would find a place ultimately in the patient’s hands and then in the market.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: Perfect. Thanks very much.

Thank you. At this time, I would now like to turn the conference back over to Chris Vaddi for closing remarks.

Chris Vaddi, Founder and Chief Executive Officer, Prelude Therapeutics: All right. Thank you, everyone, for your time, and have a great day.

Sean Brusky, Chief Business Officer, Prelude Therapeutics: This concludes today’s conference call. Thank you for participating. You may now disconnect.